MDAnalysis2.9.0 water-bridge analysis on own actual TIP3P trajectory, NumPy1.26.4/SciPy1.13.1/Python3.11. Native LGPLv2.1+ module used from installed environment, not redistributed. Fixeddisjointendsets/51actualframes/order0direct/1and2intermediatewaters. No newMD/lifetime/free-energy claim. Run bash setup.sh, bash run.sh, bash verify.sh, bash plot.sh within allocated CPU; normal batch sbatch job.slurm.
